Gene: LINC01339 ENSG00000248555

Description

long intergenic non-protein coding RNA 1339 [Source:HGNC Symbol;Acc:HGNC:50549]

Location

Chromosome 5: 90,057,856-90,290,093 reverse strand.

GRCh38:CM000667.2

About this gene

This gene has 33 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000524094.3	LINC01339-204	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000813478.1	LINC01339-211	489	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000669667.2	LINC01339-209	1039	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000813483.1	LINC01339-216	928	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000813499.1	LINC01339-232	869	No protein	-	lncRNA	-	-
ENST00000813489.1	LINC01339-222	738	No protein	-	lncRNA	-	-
ENST00000813495.1	LINC01339-228	734	No protein	-	lncRNA	-	-
ENST00000813494.1	LINC01339-227	719	No protein	-	lncRNA	-	-
ENST00000813493.1	LINC01339-226	699	No protein	-	lncRNA	-	-
ENST00000667644.1	LINC01339-208	674	No protein	-	lncRNA	-	-
ENST00000813481.1	LINC01339-214	629	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670522.1	LINC01339-210	621	No protein	-	lncRNA	-	-
ENST00000813480.1	LINC01339-213	589	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000813482.1	LINC01339-215	578	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000519336.1	LINC01339-203	561	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000505712.6	LINC01339-201	542	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000813491.1	LINC01339-224	520	No protein	-	lncRNA	-	-
ENST00000813484.1	LINC01339-217	516	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000813479.1	LINC01339-212	496	No protein	-	lncRNA	-	-
ENST00000813492.1	LINC01339-225	493	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658685.1	LINC01339-205	485	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000813485.1	LINC01339-218	482	No protein	-	lncRNA	-	-
ENST00000660853.2	LINC01339-206	469	No protein	-	lncRNA	-	-
ENST00000813496.1	LINC01339-229	468	No protein	-	lncRNA	-	-
ENST00000813497.1	LINC01339-230	465	No protein	-	lncRNA	-	-
ENST00000664570.1	LINC01339-207	453	No protein	-	lncRNA	-	-
ENST00000813487.1	LINC01339-220	435	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000813490.1	LINC01339-223	433	No protein	-	lncRNA	-	-
ENST00000813498.1	LINC01339-231	427	No protein	-	lncRNA	-	-
ENST00000518436.5	LINC01339-202	375	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000813488.1	LINC01339-221	346	No protein	-	lncRNA	-	-
ENST00000813500.1	LINC01339-233	343	No protein	-	lncRNA	-	-
ENST00000813486.1	LINC01339-219	313	No protein	-	lncRNA	-	-

Gene: LINC01339 ENSG00000248555

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Gene: LINC01339 ENSG00000248555

Summary

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