Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
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ID History
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Gene: STARD4-AS1 ENSG00000246859

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Description

STARD4 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44117]

Location

Chromosome 5: 111,510,396-111,739,726 forward strand.

GRCh38:CM000667.2

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000500779.2	STARD4-AS1-201	5525	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000666013.1	STARD4-AS1-204	4215	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654777.1	STARD4-AS1-203	2699	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000788276.1	STARD4-AS1-207	2092	No protein	-	lncRNA		-	-
ENST00000788277.1	STARD4-AS1-208	1866	No protein	-	lncRNA		-	-
ENST00000788272.1	STARD4-AS1-205	1759	No protein	-	lncRNA		-	-
ENST00000788274.1	STARD4-AS1-206	1490	No protein	-	lncRNA		-	-
ENST00000788279.1	STARD4-AS1-210	900	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000788280.1	STARD4-AS1-211	894	No protein	-	lncRNA		-	-
ENST00000788281.1	STARD4-AS1-212	745	No protein	-	lncRNA		-	-
ENST00000513221.1	STARD4-AS1-202	523	No protein	-	lncRNA		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000788278.1	STARD4-AS1-209	343	No protein	-	lncRNA		-	-

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Summary

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