Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Gene: TNFRSF10A-DT ENSG00000246582

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Description

TNFRSF10A divergent transcript [Source:HGNC Symbol;Acc:HGNC:52647]

Gene Synonyms

LOC389641, PLACT1

Location

Chromosome 8: 23,224,471-23,230,926 forward strand.

GRCh38:CM000670.2

About this gene

This gene has 14 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000522600.1	TNFRSF10A-DT-203	632	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000840436.1	TNFRSF10A-DT-205	1171	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000500853.2	TNFRSF10A-DT-201	1982	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000840439.1	TNFRSF10A-DT-208	1777	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670072.2	TNFRSF10A-DT-204	1709	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000517774.2	TNFRSF10A-DT-202	1471	No protein	-	lncRNA		-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000840438.1	TNFRSF10A-DT-207	1467	No protein	-	lncRNA		-	-
ENST00000840440.1	TNFRSF10A-DT-209	1452	No protein	-	lncRNA		-	-
ENST00000840442.1	TNFRSF10A-DT-211	1343	No protein	-	lncRNA		-	-
ENST00000840437.1	TNFRSF10A-DT-206	1313	No protein	-	lncRNA		-	-
ENST00000840441.1	TNFRSF10A-DT-210	1212	No protein	-	lncRNA		-	-
ENST00000840445.1	TNFRSF10A-DT-214	1013	No protein	-	lncRNA		-	-
ENST00000840444.1	TNFRSF10A-DT-213	948	No protein	-	lncRNA		-	-
ENST00000840443.1	TNFRSF10A-DT-212	468	No protein	-	lncRNA		-	-

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Summary

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