Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
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ID History
- Gene history

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Gene: MSANTD2-AS1 ENSG00000245498

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Description

MSANTD2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:55601]

Gene Synonyms

BCLET

Location

Chromosome 11: 124,800,424-124,834,487 forward strand.

GRCh38:CM000673.2

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000499143.6	MSANTD2-AS1-201	2886	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000666933.1	MSANTD2-AS1-215	4893	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664095.1	MSANTD2-AS1-212	3510	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667918.1	MSANTD2-AS1-216	3497	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657666.1	MSANTD2-AS1-207	3458	No protein	-	lncRNA		-	-
ENST00000653170.1	MSANTD2-AS1-203	3269	No protein	-	lncRNA		-	-
ENST00000655101.1	MSANTD2-AS1-205	3164	No protein	-	lncRNA		-	-
ENST00000665706.1	MSANTD2-AS1-213	3156	No protein	-	lncRNA		-	-
ENST00000529392.1	MSANTD2-AS1-202	2792	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000653593.2	MSANTD2-AS1-204	2410	No protein	-	lncRNA		-	-
ENST00000661455.1	MSANTD2-AS1-210	2373	No protein	-	lncRNA		-	-
ENST00000656769.1	MSANTD2-AS1-206	2170	No protein	-	lncRNA		-	-
ENST00000658998.1	MSANTD2-AS1-209	1970	No protein	-	lncRNA		-	-
ENST00000657884.1	MSANTD2-AS1-208	1813	No protein	-	lncRNA		-	-
ENST00000662980.2	MSANTD2-AS1-211	1511	No protein	-	lncRNA		-	-
ENST00000666874.1	MSANTD2-AS1-214	1388	No protein	-	lncRNA		-	-
ENST00000835178.1	MSANTD2-AS1-217	1219	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

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Summary

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