Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LIFR-AS1 ENSG00000244968

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Description

LIFR antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:43600]

Location

Chromosome 5: 38,556,762-38,671,216 forward strand.

GRCh38:CM000667.2

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000500817.2	LIFR-AS1-202	1342	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000500733.6	LIFR-AS1-201	3803	No protein	-	lncRNA		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000670079.1	LIFR-AS1-211	3626	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660661.1	LIFR-AS1-207	3542	No protein	-	lncRNA		-	-
ENST00000666123.1	LIFR-AS1-209	3377	No protein	-	lncRNA		-	-
ENST00000658674.1	LIFR-AS1-206	3185	No protein	-	lncRNA		-	-
ENST00000671098.1	LIFR-AS1-214	3079	No protein	-	lncRNA		-	-
ENST00000669394.2	LIFR-AS1-210	2927	No protein	-	lncRNA		-	-
ENST00000670215.1	LIFR-AS1-212	2857	No protein	-	lncRNA		-	-
ENST00000652922.1	LIFR-AS1-204	2690	No protein	-	lncRNA		-	-
ENST00000671056.1	LIFR-AS1-213	2612	No protein	-	lncRNA		-	-
ENST00000657740.1	LIFR-AS1-205	2148	No protein	-	lncRNA		-	-
ENST00000661968.1	LIFR-AS1-208	1546	No protein	-	lncRNA		-	-
ENST00000788940.1	LIFR-AS1-215	1508	No protein	-	lncRNA		-	-
ENST00000514291.1	LIFR-AS1-203	685	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

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Summary

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