Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Gene: LOLI1 ENSG00000241219

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Description

lncRNA oncogene in liver cancer 1 [Source:HGNC Symbol;Acc:HGNC:56775]

Location

Chromosome 3: 113,040,505-113,104,434 reverse strand.

GRCh38:CM000665.2

About this gene

This gene has 10 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000691778.2	LOLI1-202	936	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000784524.1	LOLI1-209	1711	No protein	-	lncRNA		-	-
ENST00000784520.1	LOLI1-205	1701	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000784525.1	LOLI1-210	1429	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000462010.2	LOLI1-201	1310	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000784518.1	LOLI1-203	1030	No protein	-	lncRNA		-	-
ENST00000784519.1	LOLI1-204	1028	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000784522.1	LOLI1-207	559	No protein	-	lncRNA		-	-
ENST00000784521.1	LOLI1-206	318	No protein	-	lncRNA		-	-
ENST00000784523.1	LOLI1-208	305	No protein	-	lncRNA		-	-

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Summary

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