Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC01554 ENSG00000236882

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Description

long intergenic non-protein coding RNA 1554 [Source:HGNC Symbol;Acc:HGNC:24687]

Gene Synonyms

C5ORF27, FIS, FLJ38821

Location

Chromosome 5: 95,838,244-95,860,141 forward strand.

GRCh38:CM000667.2

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000656444.2	LINC01554-205	1633	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000436592.6	LINC01554-202	2056	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000357880.9	LINC01554-201	1925	No protein	-	lncRNA		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000607856.2	LINC01554-203	1854	No protein	-	lncRNA		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000754944.1	LINC01554-212	1781	No protein	-	lncRNA		-	-
ENST00000718061.1	LINC01554-208	1776	No protein	-	lncRNA		-	-
ENST00000754943.1	LINC01554-211	1748	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000754942.1	LINC01554-210	1611	No protein	-	lncRNA		-	-
ENST00000754941.1	LINC01554-209	1545	No protein	-	lncRNA		-	-
ENST00000620167.1	LINC01554-204	1443	No protein	-	lncRNA		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000718060.1	LINC01554-207	1409	No protein	-	lncRNA		-	-
ENST00000702482.1	LINC01554-206	1386	No protein	-	lncRNA		-	-
ENST00000754945.1	LINC01554-213	1198	No protein	-	lncRNA		-	-
ENST00000754946.1	LINC01554-214	763	No protein	-	lncRNA		-	-
ENST00000754947.1	LINC01554-215	628	No protein	-	lncRNA		-	-

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Summary

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