Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC00402 ENSG00000235532

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Description

long intergenic non-protein coding RNA 402 [Source:HGNC Symbol;Acc:HGNC:42732]

Gene Synonyms

LINC00381

Location

Chromosome 13: 74,231,401-74,555,515 forward strand.

GRCh38:CM000675.2

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000715848.1	LINC00402-216	1350	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000419499.2	LINC00402-201	3396	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000662433.1	LINC00402-209	3000	No protein	-	lncRNA		-	-
ENST00000653992.1	LINC00402-205	2954	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654479.1	LINC00402-206	2907	No protein	-	lncRNA		-	-
ENST00000663108.1	LINC00402-211	2879	No protein	-	lncRNA		-	-
ENST00000653841.1	LINC00402-204	2868	No protein	-	lncRNA		-	-
ENST00000664361.1	LINC00402-212	2867	No protein	-	lncRNA		-	-
ENST00000662799.1	LINC00402-210	2752	No protein	-	lncRNA		-	-
ENST00000655413.1	LINC00402-207	2709	No protein	-	lncRNA		-	-
ENST00000658820.1	LINC00402-208	1803	No protein	-	lncRNA		-	-
ENST00000664844.1	LINC00402-213	1697	No protein	-	lncRNA		-	-
ENST00000649990.1	LINC00402-203	1280	No protein	-	lncRNA		-	-
ENST00000669178.1	LINC00402-214	1255	No protein	-	lncRNA		-	-
ENST00000715466.1	LINC00402-215	880	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000423629.1	LINC00402-202	727	No protein	-	lncRNA		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

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Summary

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