Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
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ID History
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Gene: LINC01777 ENSG00000235054

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Description

long intergenic non-protein coding RNA 1777 [Source:HGNC Symbol;Acc:HGNC:52567]

Location

Chromosome 1: 4,412,027-4,424,689 forward strand.

GRCh38:CM000663.2

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000635002.1	LINC01777-203	1392	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000423197.2	LINC01777-201	2077	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000669931.1	LINC01777-211	1803	No protein	-	lncRNA		-	-
ENST00000668086.1	LINC01777-210	1605	No protein	-	lncRNA		-	-
ENST00000659315.1	LINC01777-206	1590	No protein	-	lncRNA		-	-
ENST00000635312.2	LINC01777-204	1509	No protein	-	lncRNA		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000667352.2	LINC01777-209	1454	No protein	-	lncRNA		-	-
ENST00000635642.1	LINC01777-205	1347	No protein	-	lncRNA		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000670434.1	LINC01777-212	1125	No protein	-	lncRNA		-	-
ENST00000828650.1	LINC01777-214	986	No protein	-	lncRNA		-	-
ENST00000663417.1	LINC01777-207	984	No protein	-	lncRNA		-	-
ENST00000665284.1	LINC01777-208	853	No protein	-	lncRNA		-	-
ENST00000671656.1	LINC01777-213	769	No protein	-	lncRNA		-	-
ENST00000828651.1	LINC01777-215	698	No protein	-	lncRNA		-	-
ENST00000633821.2	LINC01777-202	686	No protein	-	lncRNA		-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

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Summary

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