Gene: LINC00642 ENSG00000233208

Description

long intergenic non-protein coding RNA 642 [Source:HGNC Symbol;Acc:HGNC:44293]

Location

Chromosome 14: 90,449,602-90,508,469 forward strand.

GRCh38:CM000676.2

About this gene

This gene has 39 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000849844.1	LINC00642-221	983	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000660562.2	LINC00642-214	3273	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663564.2	LINC00642-216	2179	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000419459.1	LINC00642-201	2026	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000659099.1	LINC00642-213	1796	No protein	-	lncRNA	-	-
ENST00000658034.1	LINC00642-211	1601	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661823.1	LINC00642-215	1560	No protein	-	lncRNA	-	-
ENST00000654358.1	LINC00642-206	1512	No protein	-	lncRNA	-	-
ENST00000849851.1	LINC00642-228	1475	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000444942.2	LINC00642-203	1468	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000668126.1	LINC00642-220	1393	No protein	-	lncRNA	-	-
ENST00000654220.1	LINC00642-205	1339	No protein	-	lncRNA	-	-
ENST00000655041.1	LINC00642-208	1334	No protein	-	lncRNA	-	-
ENST00000849857.1	LINC00642-234	1266	No protein	-	lncRNA	-	-
ENST00000653766.2	LINC00642-204	1197	No protein	-	lncRNA	-	-
ENST00000849852.1	LINC00642-229	1155	No protein	-	lncRNA	-	-
ENST00000849858.1	LINC00642-235	1146	No protein	-	lncRNA	-	-
ENST00000849859.1	LINC00642-236	1092	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656418.1	LINC00642-209	1070	No protein	-	lncRNA	-	-
ENST00000849854.1	LINC00642-231	1009	No protein	-	lncRNA	-	-
ENST00000666767.1	LINC00642-218	942	No protein	-	lncRNA	-	-
ENST00000849845.1	LINC00642-222	869	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000849846.1	LINC00642-223	868	No protein	-	lncRNA	-	-
ENST00000658892.1	LINC00642-212	858	No protein	-	lncRNA	-	-
ENST00000849861.1	LINC00642-238	856	No protein	-	lncRNA	-	-
ENST00000849853.1	LINC00642-230	846	No protein	-	lncRNA	-	-
ENST00000849849.1	LINC00642-226	838	No protein	-	lncRNA	-	-
ENST00000849855.1	LINC00642-232	807	No protein	-	lncRNA	-	-
ENST00000657082.1	LINC00642-210	790	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000849850.1	LINC00642-227	753	No protein	-	lncRNA	-	-
ENST00000654381.2	LINC00642-207	721	No protein	-	lncRNA	-	-
ENST00000663901.1	LINC00642-217	695	No protein	-	lncRNA	-	-
ENST00000442515.5	LINC00642-202	670	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000849856.1	LINC00642-233	621	No protein	-	lncRNA	-	-
ENST00000849860.1	LINC00642-237	566	No protein	-	lncRNA	-	-
ENST00000666845.1	LINC00642-219	558	No protein	-	lncRNA	-	-
ENST00000849847.1	LINC00642-224	541	No protein	-	lncRNA	-	-
ENST00000849848.1	LINC00642-225	519	No protein	-	lncRNA	-	-
ENST00000849862.1	LINC00642-239	420	No protein	-	lncRNA	-	-

Gene: LINC00642 ENSG00000233208

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Gene: LINC00642 ENSG00000233208

Summary

About Us

Get help

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