Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC01717 ENSG00000232812

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Description

long intergenic non-protein coding RNA 1717 [Source:HGNC Symbol;Acc:HGNC:52504]

Location

Chromosome 1: 208,728,638-208,736,286 forward strand.

GRCh38:CM000663.2

About this gene

This gene has 9 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000666184.1	LINC01717-204	1174	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000661534.1	LINC01717-203	1329	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671344.1	LINC01717-205	1128	No protein	-	lncRNA		-	-
ENST00000722533.1	LINC01717-206	889	No protein	-	lncRNA		-	-
ENST00000660747.2	LINC01717-202	765	No protein	-	lncRNA		-	-
ENST00000722536.1	LINC01717-209	635	No protein	-	lncRNA		-	-
ENST00000415754.2	LINC01717-201	550	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000722534.1	LINC01717-207	497	No protein	-	lncRNA		-	-
ENST00000722535.1	LINC01717-208	476	No protein	-	lncRNA		-	-

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Summary

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