Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC01431 ENSG00000232645

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Description

long intergenic non-protein coding RNA 1431 [Source:HGNC Symbol;Acc:HGNC:50744]

Location

Chromosome 20: 23,356,585-23,358,280 reverse strand.

GRCh38:CM000682.2

About this gene

This gene has 19 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000687401.2	LINC01431-206	797	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000686101.2	LINC01431-204	1588	No protein	-	lncRNA		-	-
ENST00000701669.2	LINC01431-209	939	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000722155.1	LINC01431-214	868	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000722160.1	LINC01431-219	802	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000452395.4	LINC01431-203	794	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000701485.2	LINC01431-208	778	No protein	-	lncRNA		-	-
ENST00000722151.1	LINC01431-210	725	No protein	-	lncRNA		-	-
ENST00000722153.1	LINC01431-212	717	No protein	-	lncRNA		-	-
ENST00000442440.3	LINC01431-201	655	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000444981.6	LINC01431-202	650	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000686497.2	LINC01431-205	644	No protein	-	lncRNA		-	-
ENST00000722154.1	LINC01431-213	594	No protein	-	lncRNA		-	-
ENST00000722157.1	LINC01431-216	561	No protein	-	lncRNA		-	-
ENST00000693649.2	LINC01431-207	555	No protein	-	lncRNA		-	-
ENST00000722158.1	LINC01431-217	535	No protein	-	lncRNA		-	-
ENST00000722156.1	LINC01431-215	499	No protein	-	lncRNA		-	-
ENST00000722159.1	LINC01431-218	440	No protein	-	lncRNA		-	-
ENST00000722152.1	LINC01431-211	418	No protein	-	lncRNA		-	-

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Summary

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