Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC01816 ENSG00000231327

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Description

long intergenic non-protein coding RNA 1816 [Source:HGNC Symbol;Acc:HGNC:52621]

Gene Synonyms

LOC100133985

Location

Chromosome 2: 70,093,885-70,142,950 reverse strand.

GRCh38:CM000664.2

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000716057.1	LINC01816-208	618	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000716062.1	LINC01816-213	1690	No protein	-	lncRNA		-	-
ENST00000716060.1	LINC01816-211	1417	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000716059.1	LINC01816-210	1411	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000716066.1	LINC01816-217	1046	No protein	-	lncRNA		-	-
ENST00000716061.1	LINC01816-212	960	No protein	-	lncRNA		-	-
ENST00000716052.1	LINC01816-203	816	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000716053.1	LINC01816-204	773	No protein	-	lncRNA		-	-
ENST00000716054.1	LINC01816-205	744	No protein	-	lncRNA		-	-
ENST00000414141.3	LINC01816-201	693	No protein	-	lncRNA		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000716055.1	LINC01816-206	652	No protein	-	lncRNA		-	-
ENST00000716056.1	LINC01816-207	647	No protein	-	lncRNA		-	-
ENST00000716064.1	LINC01816-215	580	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691543.2	LINC01816-202	555	No protein	-	lncRNA		-	-
ENST00000716058.1	LINC01816-209	542	No protein	-	lncRNA		-	-
ENST00000716063.1	LINC01816-214	509	No protein	-	lncRNA		-	-
ENST00000716065.1	LINC01816-216	481	No protein	-	lncRNA		-	-

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Summary

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