Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: LINC01546 ENSG00000228459

.

Description

long intergenic non-protein coding RNA 1546 [Source:HGNC Symbol;Acc:HGNC:27336]

Gene Synonyms

CXORF28, VAL

Location

Chromosome X: 3,271,504-3,291,550 forward strand.

GRCh38:CM000685.2

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000796717.1	LINC01546-207	648	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000457435.3	LINC01546-201	2475	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000656741.1	LINC01546-202	2458	No protein	-	lncRNA		-	-
ENST00000668004.1	LINC01546-203	2282	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668035.3	LINC01546-204	1890	No protein	-	lncRNA		-	-
ENST00000688525.1	LINC01546-206	855	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000796720.1	LINC01546-210	789	No protein	-	lncRNA		-	-
ENST00000686467.1	LINC01546-205	679	No protein	-	lncRNA		-	-
ENST00000796718.1	LINC01546-208	522	No protein	-	lncRNA		-	-
ENST00000796719.1	LINC01546-209	510	No protein	-	lncRNA		-	-
ENST00000796721.1	LINC01546-211	473	No protein	-	lncRNA		-	-
ENST00000796722.1	LINC01546-212	449	No protein	-	lncRNA		-	-

.

Summary

.

.