Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC00539 ENSG00000224429

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Description

long intergenic non-protein coding RNA 539 [Source:HGNC Symbol;Acc:HGNC:43672]

Gene Synonyms

LINC00422

Location

Chromosome 13: 21,302,862-21,362,139 reverse strand.

GRCh38:CM000675.2

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000434601.7	LINC00539-203	960	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000667082.1	LINC00539-213	2220	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000700723.1	LINC00539-217	1479	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000661173.1	LINC00539-209	1474	No protein	-	lncRNA		-	-
ENST00000700722.1	LINC00539-216	1473	No protein	-	lncRNA		-	-
ENST00000664989.1	LINC00539-212	1390	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000659153.1	LINC00539-207	1306	No protein	-	lncRNA		-	-
ENST00000700724.1	LINC00539-218	1247	No protein	-	lncRNA		-	-
ENST00000655569.1	LINC00539-205	1050	No protein	-	lncRNA		-	-
ENST00000664392.1	LINC00539-211	1038	No protein	-	lncRNA		-	-
ENST00000661286.1	LINC00539-210	1014	No protein	-	lncRNA		-	-
ENST00000608957.5	LINC00539-204	869	No protein	-	lncRNA		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000692188.1	LINC00539-215	819	No protein	-	lncRNA		-	-
ENST00000670912.1	LINC00539-214	813	No protein	-	lncRNA		-	-
ENST00000657403.1	LINC00539-206	792	No protein	-	lncRNA		-	-
ENST00000423575.5	LINC00539-202	699	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000411525.1	LINC00539-201	664	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000659380.1	LINC00539-208	513	No protein	-	lncRNA		-	-

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Summary

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