Gene: SOX1-OT ENSG00000224243

Description

SOX1 overlapping transcript [Source:HGNC Symbol;Acc:HGNC:42733]

Gene Synonyms

LINC00403

Location

Chromosome 13: 112,056,845-112,110,570 forward strand.

GRCh38:CM000675.2

About this gene

This gene has 29 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000732618.1	SOX1-OT-209	3019	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663025.1	SOX1-OT-206	2606	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671024.1	SOX1-OT-208	2074	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000421423.2	SOX1-OT-201	1837	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000662534.1	SOX1-OT-205	1670	No protein	-	lncRNA	-	-
ENST00000666176.1	SOX1-OT-207	1561	No protein	-	lncRNA	-	-
ENST00000732629.1	SOX1-OT-220	1476	No protein	-	lncRNA	-	-
ENST00000732630.1	SOX1-OT-221	1471	No protein	-	lncRNA	-	-
ENST00000732633.1	SOX1-OT-224	1424	No protein	-	lncRNA	-	-
ENST00000732631.1	SOX1-OT-222	1361	No protein	-	lncRNA	-	-
ENST00000657728.2	SOX1-OT-203	1002	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000732628.1	SOX1-OT-219	944	No protein	-	lncRNA	-	-
ENST00000732626.1	SOX1-OT-217	844	No protein	-	lncRNA	-	-
ENST00000732624.1	SOX1-OT-215	827	No protein	-	lncRNA	-	-
ENST00000732623.1	SOX1-OT-214	782	No protein	-	lncRNA	-	-
ENST00000732620.1	SOX1-OT-211	762	No protein	-	lncRNA	-	-
ENST00000732622.1	SOX1-OT-213	715	No protein	-	lncRNA	-	-
ENST00000732634.1	SOX1-OT-225	685	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000732636.1	SOX1-OT-227	680	No protein	-	lncRNA	-	-
ENST00000732627.1	SOX1-OT-218	678	No protein	-	lncRNA	-	-
ENST00000732638.1	SOX1-OT-229	648	No protein	-	lncRNA	-	-
ENST00000658904.2	SOX1-OT-204	643	No protein	-	lncRNA	-	-
ENST00000732619.1	SOX1-OT-210	632	No protein	-	lncRNA	-	-
ENST00000732632.1	SOX1-OT-223	573	No protein	-	lncRNA	-	-
ENST00000732625.1	SOX1-OT-216	565	No protein	-	lncRNA	-	-
ENST00000732637.1	SOX1-OT-228	521	No protein	-	lncRNA	-	-
ENST00000653135.1	SOX1-OT-202	512	No protein	-	lncRNA	-	-
ENST00000732621.1	SOX1-OT-212	501	No protein	-	lncRNA	-	-
ENST00000732635.1	SOX1-OT-226	343	No protein	-	lncRNA	-	-

Gene: SOX1-OT ENSG00000224243

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Gene: SOX1-OT ENSG00000224243

Summary

About Us

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