Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Gene: PCOTH ENSG00000205861

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Description

prostate and testis expressed opposite C1QTNF9B and MIPEP [Source:HGNC Symbol;Acc:HGNC:39839]

Gene Synonyms

C1QTNF9B-AS1

Location

Chromosome 13: 23,888,749-23,897,263 forward strand.

GRCh38:CM000675.2

About this gene

This gene has 9 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000417034.1	PCOTH-202	468	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000663394.2	PCOTH-203	1305	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000382133.10	PCOTH-201	947	No protein	-	lncRNA		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000849006.1	PCOTH-204	852	No protein	-	lncRNA		-	-
ENST00000849008.1	PCOTH-206	819	No protein	-	lncRNA		-	-
ENST00000849010.1	PCOTH-208	819	No protein	-	lncRNA		-	-
ENST00000849007.1	PCOTH-205	778	No protein	-	lncRNA		-	-
ENST00000849011.1	PCOTH-209	731	No protein	-	lncRNA		-	-
ENST00000849009.1	PCOTH-207	716	No protein	-	lncRNA		-	-

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Summary

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