Gene: HCG9 ENSG00000204625

Description

HLA complex group 9 [Source:HGNC Symbol;Acc:HGNC:21243]

Gene Synonyms

HCGIX, HCGIX-4, HCGIX4, PERB11

Location

Chromosome 6: 29,975,112-29,978,586 forward strand.

GRCh38:CM000668.2

View alleles of this gene on alternative sequences

About this gene

This gene has 12 transcripts (splice variants) and 1 gene allele.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000376800.7	HCG9-201	663	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000463275.2	HCG9-202	1604	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000850536.1	HCG9-207	1525	No protein	-	lncRNA	-	-
ENST00000850532.1	HCG9-203	1303	No protein	-	lncRNA	-	-
ENST00000850539.1	HCG9-210	1268	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850537.1	HCG9-208	1098	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850535.1	HCG9-206	897	No protein	-	lncRNA	-	-
ENST00000850533.1	HCG9-204	634	No protein	-	lncRNA	-	-
ENST00000850534.1	HCG9-205	620	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850538.1	HCG9-209	578	No protein	-	lncRNA	-	-
ENST00000850541.1	HCG9-212	528	No protein	-	lncRNA	-	-
ENST00000850540.1	HCG9-211	482	No protein	-	lncRNA	-	-

Gene: HCG9 ENSG00000204625

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Gene: HCG9 ENSG00000204625

Summary

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