Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC00544 ENSG00000122043

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Description

long intergenic non-protein coding RNA 544 [Source:HGNC Symbol;Acc:HGNC:43679]

Location

Chromosome 13: 29,935,771-29,963,491 forward strand.

GRCh38:CM000675.2

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000777689.1	LINC00544-207	573	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000692335.1	LINC00544-206	1357	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662443.1	LINC00544-205	1215	No protein	-	lncRNA		-	-
ENST00000656266.1	LINC00544-203	1090	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000400540.5	LINC00544-201	1031	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000777697.1	LINC00544-215	1013	No protein	-	lncRNA		-	-
ENST00000777694.1	LINC00544-212	966	No protein	-	lncRNA		-	-
ENST00000481738.2	LINC00544-202	963	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000777696.1	LINC00544-214	840	No protein	-	lncRNA		-	-
ENST00000777693.1	LINC00544-211	819	No protein	-	lncRNA		-	-
ENST00000777692.1	LINC00544-210	803	No protein	-	lncRNA		-	-
ENST00000777695.1	LINC00544-213	790	No protein	-	lncRNA		-	-
ENST00000777699.1	LINC00544-217	703	No protein	-	lncRNA		-	-
ENST00000777691.1	LINC00544-209	659	No protein	-	lncRNA		-	-
ENST00000777690.1	LINC00544-208	596	No protein	-	lncRNA		-	-
ENST00000658535.1	LINC00544-204	513	No protein	-	lncRNA		-	-
ENST00000777698.1	LINC00544-216	433	No protein	-	lncRNA		-	-

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Summary

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