Gene: FOXC1 ENSG00000054598

Description

forkhead box C1 [Source:HGNC Symbol;Acc:HGNC:3800]

Gene Synonyms

ARA, FKHL7, FREAC3, IGDA, IHG1, IRID1

Location

Chromosome 6: 1,609,915-1,613,897 forward strand.

GRCh38:CM000668.2

About this gene

This gene has 1 transcript (splice variant), 230 orthologues, 41 paralogues and is associated with 11 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000645831.2	FOXC1-201	3983	553aa	ENSP00000493906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4473	Q12948 W6CJ52	NM_001453.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Gene: FOXC1 ENSG00000054598

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Gene: FOXC1 ENSG00000054598

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