Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: VPS50 ENSECAG00000022811

.

Description

VPS50 subunit of EARP/GARPII complex [Source:VGNC Symbol;Acc:VGNC:24933]

Location

Primary_assembly 4: 36,933,253-37,065,019 forward strand.

EquCab3.0:CM009151.1

About this gene

This gene has 9 transcripts (splice variants) and 218 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000087216.1	VPS50-209	3672	977aa	ENSECAP00000078674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000127330.1	VPS50-201	3806	960aa	ENSECAP00000063580.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000072454.2	VPS50-206	3682	948aa	ENSECAP00000054471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5Q103	-
ENSECAT00000060820.2	VPS50-202	3541	946aa	ENSECAP00000031343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2HCF4	-
ENSECAT00000024832.4	VPS50-208	3507	941aa	ENSECAP00000020648.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6VBE0	-
ENSECAT00000140762.1	VPS50-203	3505	934aa	ENSECAP00000085343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000087022.1	VPS50-204	3496	931aa	ENSECAP00000084336.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000024807.3	VPS50-207	3489	937aa	ENSECAP00000020625.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6VIR0	-
ENSECAT00000140604.1	VPS50-205	3457	918aa	ENSECAP00000060401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

.

Summary

.

.