Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SDC1 ENSECAG00000014709

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Description

syndecan 1 [Source:VGNC Symbol;Acc:VGNC:22761]

Location

Primary_assembly 15: 76,222,025-76,309,782 forward strand.

EquCab3.0:CM009162.1

About this gene

This gene has 10 transcripts (splice variants), 133 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000120978.1	SDC1-202	3623	377aa	ENSECAP00000068825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000079056.1	SDC1-210	3159	345aa	ENSECAP00000080470.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000147153.1	SDC1-206	3086	369aa	ENSECAP00000081964.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000130787.1	SDC1-208	3074	359aa	ENSECAP00000063784.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000098968.1	SDC1-209	3051	353aa	ENSECAP00000070346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000039597.3	SDC1-201	3049	309aa	ENSECAP00000032624.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2HG60	-
ENSECAT00000140291.1	SDC1-207	2993	292aa	ENSECAP00000077294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000111237.1	SDC1-203	2970	298aa	ENSECAP00000090324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000092579.1	SDC1-204	2879	326aa	ENSECAP00000085840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000015437.3	SDC1-205	2856	318aa	ENSECAP00000012405.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7CBA1	-

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Summary

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