Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SOX6 ENSECAG00000010880

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Description

SRY-box transcription factor 6 [Source:VGNC Symbol;Acc:VGNC:23463]

Location

Primary_assembly 7: 86,742,220-87,308,853 reverse strand.

EquCab3.0:CM009154.1

About this gene

This gene has 10 transcripts (splice variants), 213 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000011250.4	SOX6-205	4380	856aa	ENSECAP00000008774.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7DPY5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000071598.2	SOX6-204	4302	830aa	ENSECAP00000054244.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5Q144	-
ENSECAT00000069897.2	SOX6-206	4062	750aa	ENSECAP00000048258.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5PID0	-
ENSECAT00000037093.3	SOX6-203	3284	844aa	ENSECAP00000025665.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2KQQ2	-
ENSECAT00000061746.3	SOX6-201	3121	147aa	ENSECAP00000040802.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2I1D5	-
ENSECAT00000048018.3	SOX6-202	2667	804aa	ENSECAP00000034122.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2HJS2	-
ENSECAT00000039957.3	SOX6-207	1160	192aa	ENSECAP00000037511.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2HW05	-
ENSECAT00000091250.1	SOX6-209	1118	158aa	ENSECAP00000056266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0R3S2	-
ENSECAT00000092509.1	SOX6-210	1049	157aa	ENSECAP00000079660.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0SZG8	-
ENSECAT00000127445.1	SOX6-208	1023	156aa	ENSECAP00000083706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0TBM6	-

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Summary

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