Transcript: ENSDART00000193913.1 si:ch1073-416j23.1-203

Description

si:ch1073-416j23.1 [Source:ZFIN;Acc:ZDB-GENE-100922-35]

Location

Chromosome 9: 10,781,687-10,805,231 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 23 domains and features, is associated with 561 variant alleles and maps to 223 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000055934.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000193913.1	si:ch1073-416j23.1-203	3344	671aa	ENSDARP00000150236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000078348.5	si:ch1073-416j23.1-201	3257	642aa	ENSDARP00000072810.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R738	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000134911.2	si:ch1073-416j23.1-202	1668	548aa	ENSDARP00000114966.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 3,344 bps, Translation length: 671 residues

Version

ENSDART00000193913.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000193913.1 si:ch1073-416j23.1-203

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Transcript: ENSDART00000193913.1 si:ch1073-416j23.1-203

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