Transcript: ENSDART00000193786.1 hmgb1a-202

Description

high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]

Gene Synonyms

hmgb1, ik:tdsubc_1a5, tdsubc_1a5, wu:fb23c02, xx:tdsubc_1a5, zgc:77104

Location

About this transcript

This transcript has 5 exons, is annotated with 25 domains and features, is associated with 102 variant alleles and maps to 177 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000165386.3	hmgb1a-201	1864	205aa	ENSDARP00000134229.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NX86	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000193786.1	hmgb1a-202	1267	205aa	ENSDARP00000153427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NX86	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,267 bps, Translation length: 205 residues

Version

ENSDART00000193786.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.