Transcript: ENSDART00000193772.1 hephl1a-204

Description

hephaestin-like 1a [Source:ZFIN;Acc:ZDB-GENE-070801-4]

Location

Chromosome 15: 2,421,432-2,470,804 forward strand.

About this transcript

This transcript has 19 exons, is annotated with 38 domains and features, is associated with 1265 variant alleles and maps to 116 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059231.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000156428.3	hephl1a-203	5525	1094aa	ENSDARP00000128173.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WD76	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000193772.1	hephl1a-204	3783	1124aa	ENSDARP00000145567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000082294.6	hephl1a-201	1974	583aa	ENSDARP00000076731.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000154059.2	hephl1a-202	684	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 3,783 bps, Translation length: 1,124 residues

Version

ENSDART00000193772.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000193772.1 hephl1a-204

Summary

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Transcript: ENSDART00000193772.1 hephl1a-204

Summary

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