Transcript: ENSDART00000192268.1 cux1a-204

Description

cut-like homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5868]

Gene Synonyms

fi22b07, si:ch211-251d10.5, wu:fi22b07, wu:fk35a11

Location

Chromosome 10: 32,903,341-33,156,789 reverse strand.

About this transcript

This transcript has 25 exons, is annotated with 69 domains and features, is associated with 6080 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000078459.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000081170.6	cux1a-201	4488	1495aa	ENSDARP00000075613.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F4J9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000136245.3	cux1a-202	5997	223aa	ENSDARP00000119597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000182065.1	cux1a-203	4407	1468aa	ENSDARP00000150637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QFA5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000192268.1	cux1a-204	4401	1466aa	ENSDARP00000147023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q0A5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 4,401 bps, Translation length: 1,466 residues

Version

ENSDART00000192268.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSDART00000192268.1 cux1a-204

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Transcript: ENSDART00000192268.1 cux1a-204

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