Transcript: ENSDART00000191167.1 xirp1-203

Description

xin actin binding repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-050221-2]

Gene Synonyms

Xin alpha 2, cmya1, si:dkey-24c2.7, xin

Location

Chromosome 2: 23,750,292-23,768,832 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 61 domains and features, is associated with 516 variant alleles and maps to 181 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000030722.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000042413.5	xirp1-201	7297	2297aa	ENSDARP00000042412.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5PZ43	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000148685.3	xirp1-202	7503	1484aa	ENSDARP00000123837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000191167.1	xirp1-203	7450	2321aa	ENSDARP00000152018.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 7,450 bps, Translation length: 2,321 residues

Version

ENSDART00000191167.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSDART00000191167.1 xirp1-203

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Transcript: ENSDART00000191167.1 xirp1-203

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