Transcript: ENSDART00000190932.1 si:ch211-185a18.2-205

Description

si:ch211-185a18.2 [Source:ZFIN;Acc:ZDB-GENE-120119-1]

Gene Synonyms

kiaa0586, ta3, talpid3

Location

Chromosome 17: 11,072,942-11,368,662 reverse strand.

About this transcript

This transcript has 30 exons, is annotated with 34 domains and features, is associated with 4541 variant alleles and maps to 151 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000097772.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000159061.3	si:ch211-185a18.2-203	5745	1548aa	ENSDARP00000131742.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000188694.1	si:ch211-185a18.2-204	5634	1511aa	ENSDARP00000153595.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000190932.1	si:ch211-185a18.2-205	5616	1505aa	ENSDARP00000149367.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000153915.2	si:ch211-185a18.2-202	2109	697aa	ENSDARP00000129806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000153869.2	si:ch211-185a18.2-201	288	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 30, Coding exons: 30, Transcript length: 5,616 bps, Translation length: 1,505 residues

Version

ENSDART00000190932.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000190932.1 si:ch211-185a18.2-205

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Transcript: ENSDART00000190932.1 si:ch211-185a18.2-205

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