Transcript: ENSDART00000189677.1 NLGN1-203

Description

neuroligin 1 [Source:ZFIN;Acc:ZDB-GENE-090918-1]

Location

Chromosome 11: 9,564,154-9,948,487 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 27 domains and features, is associated with 5054 variant alleles and maps to 132 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077710.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000189677.1	NLGN1-203	2604	867aa	ENSDARP00000155186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D2X2F9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000113171.3	NLGN1-204	2544	847aa	ENSDARP00000098640.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6EUL6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000123359.3	NLGN1-202	2203	304aa	ENSDARP00000105451.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000167465.2	NLGN1-201	153	51aa	ENSDARP00000139283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,604 bps, Translation length: 867 residues

Version

ENSDART00000189677.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000189677.1 NLGN1-203

Summary

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Transcript: ENSDART00000189677.1 NLGN1-203

Summary

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