Transcript: ENSDART00000188791.1 zgc:113436-204

Description

zgc:113436 [Source:ZFIN;Acc:ZDB-GENE-050220-6]

Location

Chromosome 5: 28,030,954-28,052,883 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 6 domains and features, is associated with 623 variant alleles and maps to 222 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056204.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000078660.7	zgc:113436-201	2170	433aa	ENSDARP00000073121.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KGZ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000188791.1	zgc:113436-204	3729	396aa	ENSDARP00000154584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000160013.2	zgc:113436-203	1861	329aa	ENSDARP00000134499.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4II69	-
ENSDART00000134871.2	zgc:113436-202	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 3,729 bps, Translation length: 396 residues

Version

ENSDART00000188791.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000188791.1 zgc:113436-204

Summary

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Transcript: ENSDART00000188791.1 zgc:113436-204

Summary

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