Transcript: ENSDART00000187996.1 CCDC88C-202

Description

coiled-coil domain containing 88C [Source:ZFIN;Acc:ZDB-GENE-100419-3]

Location

About this transcript

This transcript has 29 exons, is annotated with 62 domains and features, is associated with 3100 variant alleles and maps to 457 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000062010.5	CCDC88C-201	7789	1997aa	ENSDARP00000062009.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000187996.1	CCDC88C-202	9374	2023aa	ENSDARP00000149375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QCI3-1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 9,374 bps, Translation length: 2,023 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A2R8QCI3

Version

ENSDART00000187996.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.