Transcript: ENSDART00000186679.1 TMCO4-203

Description

transmembrane and coiled-coil domains 4 [Source:ZFIN;Acc:ZDB-GENE-041008-216]

Location

Chromosome 23: 39,695,827-39,727,347 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 21 domains and features, is associated with 639 variant alleles and maps to 86 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000078924.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000113893.4	TMCO4-204	2352	688aa	ENSDARP00000103977.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F6A2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000186679.1	TMCO4-203	2460	590aa	ENSDARP00000150284.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000134589.2	TMCO4-201	2006	668aa	ENSDARP00000117238.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000141509.2	TMCO4-202	534	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 11, Transcript length: 2,460 bps, Translation length: 590 residues

Version

ENSDART00000186679.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000186679.1 TMCO4-203

Summary

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Transcript: ENSDART00000186679.1 TMCO4-203

Summary

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