Transcript: ENSDART00000184411.1 mgrn1a-204

Description

mahogunin, ring finger 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6192]

Gene Synonyms

mgrn1, wu:fi38c03

Location

Chromosome 12: 20,122,711-20,147,219 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 18 domains and features, is associated with 292 variant alleles and maps to 139 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000100072.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000161505.2	mgrn1a-201	2861	529aa	ENSDARP00000132672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0JZJ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000168364.2	mgrn1a-203	4827	554aa	ENSDARP00000140478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZVH3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000184411.1	mgrn1a-204	2107	554aa	ENSDARP00000148063.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZVH3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000162481.2	mgrn1a-202	730	135aa	ENSDARP00000140367.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,107 bps, Translation length: 554 residues

Version

ENSDART00000184411.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSDART00000184411.1 mgrn1a-204

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Transcript: ENSDART00000184411.1 mgrn1a-204

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