Transcript: ENSDART00000183580.1 rnpc3-203

Description

RNA-binding region (RNP1, RRM) containing 3 [Source:ZFIN;Acc:ZDB-GENE-060312-35]

Gene Synonyms

caliban, clbn, zgc:136847

Location

Chromosome 24: 28,934,875-28,968,355 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 31 domains and features, is associated with 401 variant alleles and maps to 128 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000011247.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000017427.12	rnpc3-201	1729	505aa	ENSDARP00000019728.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TBF5 F1Q8J0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000185020.1	rnpc3-204	6855	505aa	ENSDARP00000155778.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TBF5 F1Q8J0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000183580.1	rnpc3-203	3458	505aa	ENSDARP00000155505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TBF5 F1Q8J0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000153761.2	rnpc3-202	897	186aa	ENSDARP00000127851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 16, Coding exons: 14, Transcript length: 3,458 bps, Translation length: 505 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: F1Q8J0

Version

ENSDART00000183580.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSDART00000183580.1 rnpc3-203

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Transcript: ENSDART00000183580.1 rnpc3-203

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