Transcript: ENSDART00000181340.1 scrn3-204

Description

secernin 3 [Source:NCBI gene (formerly Entrezgene);Acc:326058]

Location

Chromosome 9: 2,560,219-2,573,121 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 310 variant alleles and maps to 122 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000016611.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000016710.9	scrn3-201	2397	417aa	ENSDARP00000014414.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803W1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181340.1	scrn3-204	3320	438aa	ENSDARP00000147919.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000135076.2	scrn3-202	792	244aa	ENSDARP00000120788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137706.2	scrn3-203	903	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 3,320 bps, Translation length: 438 residues

Version

ENSDART00000181340.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000181340.1 scrn3-204

Summary

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Transcript: ENSDART00000181340.1 scrn3-204

Summary

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