Transcript: ENSDART00000180662.1 retreg1-203

Description

reticulophagy regulator 1 [Source:ZFIN;Acc:ZDB-GENE-130221-1]

Location

Chromosome 2: 31,781,843-31,791,633 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 15 domains and features, is associated with 266 variant alleles and maps to 54 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000079059.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112763.4	retreg1-201	1174	391aa	ENSDARP00000099481.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000180662.1	retreg1-203	1579	347aa	ENSDARP00000150627.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QB28	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000170880.2	retreg1-202	1243	332aa	ENSDARP00000138020.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,579 bps, Translation length: 347 residues

Version

ENSDART00000180662.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000180662.1 retreg1-203

Summary

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Transcript: ENSDART00000180662.1 retreg1-203

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