Transcript: ENSDART00000179992.1 hoxc10a-203

Description

homeobox C10a [Source:ZFIN;Acc:ZDB-GENE-990415-110]

Gene Synonyms

hoxc10, z-81

Location

Chromosome 23: 35,969,228-36,086,366 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 18 domains and features, is associated with 887 variant alleles and maps to 301 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000070348.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000184107.1	hoxc10a-204	1872	337aa	ENSDARP00000147493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NI81	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179992.1	hoxc10a-203	1769	337aa	ENSDARP00000156025.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NI81	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000053295.7	hoxc10a-201	1601	327aa	ENSDARP00000053294.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BE66	-
ENSDART00000130260.3	hoxc10a-202	1242	337aa	ENSDARP00000111519.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NI81	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 1,769 bps, Translation length: 337 residues

Version

ENSDART00000179992.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSDART00000179992.1 hoxc10a-203

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Transcript: ENSDART00000179992.1 hoxc10a-203

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