Transcript: ENSDART00000179634.2 zgc:152968-204

Description

zgc:152968 [Source:ZFIN;Acc:ZDB-GENE-061013-448]

Location

Chromosome 1: 35,985,813-36,002,774 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 15 domains and features, is associated with 336 variant alleles and maps to 206 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000037002.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000139636.2	zgc:152968-202	4264	1251aa	ENSDARP00000122980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JII5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000179634.2	zgc:152968-204	8619	1217aa	ENSDARP00000144525.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000175902.2	zgc:152968-203	2614	770aa	ENSDARP00000143764.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000137071.2	zgc:152968-201	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 8,619 bps, Translation length: 1,217 residues

Version

ENSDART00000179634.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000179634.2 zgc:152968-204

Summary

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Transcript: ENSDART00000179634.2 zgc:152968-204

Summary

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