Transcript: ENSDART00000177639.2 sh3glb1b-206

Description

SH3-domain GRB2-like endophilin B1b [Source:NCBI gene (formerly Entrezgene);Acc:334911]

Location

Chromosome 2: 16,173,999-16,193,890 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 17 domains and features, is associated with 501 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000010956.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000045933.7	sh3glb1b-201	1678	360aa	ENSDARP00000045932.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0V151	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000157601.2	sh3glb1b-205	1530	397aa	ENSDARP00000138573.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IS36	-
ENSDART00000177639.2	sh3glb1b-206	1506	389aa	ENSDARP00000143647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TZL5	-
ENSDART00000190186.1	sh3glb1b-207	1431	364aa	ENSDARP00000149174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RNA7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000152046.2	sh3glb1b-204	641	54aa	ENSDARP00000126375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000135107.2	sh3glb1b-203	828	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000131840.2	sh3glb1b-202	816	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,506 bps, Translation length: 389 residues

Version

ENSDART00000177639.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000177639.2 sh3glb1b-206

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Transcript: ENSDART00000177639.2 sh3glb1b-206

Summary

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