Transcript: ENSDART00000176803.2 mhc1zea-204

Description

major histocompatibility complex class I ZEA [Source:ZFIN;Acc:ZDB-GENE-070705-176]

Location

Chromosome 1: 47,120,033-47,122,141 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 18 domains and features, is associated with 19 variant alleles and maps to 129 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000001470.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000101143.5	mhc1zea-202	2047	350aa	ENSDARP00000091917.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E7F2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000176803.2	mhc1zea-204	1138	326aa	ENSDARP00000144516.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YP14	-
ENSDART00000159925.2	mhc1zea-203	1020	340aa	ENSDARP00000133292.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000048445.7	mhc1zea-201	960	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,138 bps, Translation length: 326 residues

Version

ENSDART00000176803.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000176803.2 mhc1zea-204

Summary

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Transcript: ENSDART00000176803.2 mhc1zea-204

Summary

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