Transcript: ENSDART00000175642.2 CLIP2-204

Description

CAP-GLY domain containing linker protein 2 [Source:ZFIN;Acc:ZDB-GENE-100727-3]

Location

Chromosome 5: 59,397,348-59,479,654 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 46 domains and features, is associated with 539 variant alleles and maps to 123 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059596.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000175642.2	CLIP2-204	3747	1051aa	ENSDARP00000144280.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000180882.1	CLIP2-205	4032	1034aa	ENSDARP00000150723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000082983.6	CLIP2-206	3948	1006aa	ENSDARP00000077418.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M2BJA6	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000148659.3	CLIP2-202	3843	1041aa	ENSDARP00000124509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9Q4W2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000150230.2	CLIP2-201	624	208aa	ENSDARP00000123919.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149447.2	CLIP2-203	830	108aa	ENSDARP00000123947.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 3,747 bps, Translation length: 1,051 residues

Version

ENSDART00000175642.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000175642.2 CLIP2-204

Summary

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Transcript: ENSDART00000175642.2 CLIP2-204

Summary

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