Transcript: ENSDART00000174313.2 mhc2d4b-202

Description

major histocompatibility complex class II d4b [Source:ZFIN;Acc:ZDB-GENE-030131-4747]

Location

Chromosome 4: 76,362,874-76,370,661 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 19 domains and features, is associated with 692 variant alleles and maps to 177 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000101030.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000174313.2	mhc2d4b-202	2343	249aa	ENSDARP00000143185.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1L1QZR0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000168831.2	mhc2d4b-201	738	245aa	ENSDARP00000138504.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000174356.2	mhc2d4b-203	764	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,343 bps, Translation length: 249 residues

Version

ENSDART00000174313.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000174313.2 mhc2d4b-202

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Transcript: ENSDART00000174313.2 mhc2d4b-202

Summary

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