Transcript: ENSDART00000174307.2 HDAC8-203

Description

histone deacetylase 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2772]

Location

About this transcript

This transcript has 5 exons, is associated with 226 variant alleles and maps to 42 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000009184.6	HDAC8-204	1935	378aa	ENSDARP00000017858.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136047.4	HDAC8-205	725	213aa	ENSDARP00000120949.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000174307.2	HDAC8-203	566	62aa	ENSDARP00000143157.1	Nonsense mediated decay	-
ENSDART00000174282.2	HDAC8-201	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
ENSDART00000132716.2	HDAC8-202	475	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 566 bps, Translation length: 62 residues

Version

ENSDART00000174307.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.