Transcript: ENSDART00000174269.2 VPS35-203

Description

VPS35 retromer complex component [Source:ZFIN;Acc:ZDB-GENE-030131-2042]

Location

Chromosome 7: 41,764,932-41,777,228 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2 variant alleles and maps to 40 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000008224.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000016105.11	VPS35-201	3573	831aa	ENSDARP00000003960.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6ZM34	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000174058.2	VPS35-204	752	201aa	ENSDARP00000143145.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000138800.2	VPS35-205	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000174269.2	VPS35-203	701	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000174168.2	VPS35-202	646	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 701 bps,

Version

ENSDART00000174269.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000174269.2 VPS35-203

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Transcript: ENSDART00000174269.2 VPS35-203

Summary

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