Transcript: ENSDART00000174221.2 SIN3A-201

Description

SIN3 transcription regulator family member Ab [Source:ZFIN;Acc:ZDB-GENE-030131-2066]

Location

Chromosome 7: 48,352,815-48,368,593 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 524 variant alleles and maps to 39 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059812.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000180034.1	SIN3A-204	6698	1262aa	ENSDARP00000149185.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F0R9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000083555.7	SIN3A-203	5330	1262aa	ENSDARP00000077990.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F0R9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000174221.2	SIN3A-201	1598	204aa	ENSDARP00000143146.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000174381.2	SIN3A-202	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,598 bps, Translation length: 204 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000174221.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000174221.2 SIN3A-201

Summary

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Transcript: ENSDART00000174221.2 SIN3A-201

Summary

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