Transcript: ENSDART00000174084.2 trpm5-203

Description

transient receptor potential cation channel, subfamily M, member 5 [Source:ZFIN;Acc:ZDB-GENE-060503-736]

Gene Synonyms

si:dkey-56p7.1

Location

About this transcript

This transcript has 2 exons, is associated with 252 variant alleles and maps to 40 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000083473.7	trpm5-201	4576	1214aa	ENSDARP00000077908.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000157917.2	trpm5-202	4121	1165aa	ENSDARP00000132106.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	S5UH55	-
ENSDART00000185580.1	trpm5-204	3860	1160aa	ENSDARP00000154970.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QPK7	-
ENSDART00000174084.2	trpm5-203	388	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 388 bps,

Version

ENSDART00000174084.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.