Transcript: ENSDART00000174026.2 nhsl2-202

Description

NHS-like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-951]

Gene Synonyms

zmp:0000000948

Location

Chromosome 7: 51,475,921-51,485,727 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 209 variant alleles and maps to 20 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000089066.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000174306.2	nhsl2-206	8650	1221aa	ENSDARP00000143001.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1L1QZ88	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000082464.6	nhsl2-201	2960	927aa	ENSDARP00000076899.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F9X0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000174111.2	nhsl2-204	1142	250aa	ENSDARP00000143117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000174054.2	nhsl2-203	244	81aa	ENSDARP00000143127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000174263.2	nhsl2-205	240	66aa	ENSDARP00000143170.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000174026.2	nhsl2-202	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 766 bps,

Version

ENSDART00000174026.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000174026.2 nhsl2-202

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Transcript: ENSDART00000174026.2 nhsl2-202

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