Transcript: ENSDART00000173981.2 si:ch211-200p22.4-204

Description

si:ch211-200p22.4 [Source:ZFIN;Acc:ZDB-GENE-081104-61]

Location

Chromosome 7: 23,759,260-23,768,234 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 4 domains and features, is associated with 507 variant alleles and maps to 17 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000029170.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146104.4	si:ch211-200p22.4-202	9802	587aa	ENSDARP00000117338.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZDD1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000175108.2	si:ch211-200p22.4-205	1875	624aa	ENSDARP00000143996.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y9Z9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173527.2	si:ch211-200p22.4-203	341	114aa	ENSDARP00000142954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000173981.2	si:ch211-200p22.4-204	232	78aa	ENSDARP00000142772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000133803.3	si:ch211-200p22.4-201	818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 232 bps, Translation length: 78 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000173981.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENSDART00000173981.2 si:ch211-200p22.4-204

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Transcript: ENSDART00000173981.2 si:ch211-200p22.4-204

Summary

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