Transcript: ENSDART00000173845.2 ptpn5-202

Description

protein tyrosine phosphatase non-receptor type 5 [Source:ZFIN;Acc:ZDB-GENE-101028-3]

Location

Chromosome 7: 39,624,728-39,661,162 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 31 domains and features, is associated with 2 variant alleles and maps to 131 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074866.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114774.4	ptpn5-201	1593	530aa	ENSDARP00000100744.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCZ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000173845.2	ptpn5-202	8303	529aa	ENSDARP00000142788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSH3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000173847.2	ptpn5-203	656	176aa	ENSDARP00000142634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NS26	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 12, Transcript length: 8,303 bps, Translation length: 529 residues

Version

ENSDART00000173845.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000173845.2 ptpn5-202

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Transcript: ENSDART00000173845.2 ptpn5-202

Summary

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