Transcript: ENSDART00000173845.2 ptpn5-202

Description

protein tyrosine phosphatase non-receptor type 5 [Source:ZFIN;Acc:ZDB-GENE-101028-3]

Location

About this transcript

This transcript has 15 exons, is annotated with 37 domains and features, is associated with 2 variant alleles and maps to 131 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114774.4	ptpn5-201	1593	530aa	ENSDARP00000100744.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000173845.2	ptpn5-202	8303	529aa	ENSDARP00000142788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M3B4B0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173847.2	ptpn5-203	656	176aa	ENSDARP00000142634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 12, Transcript length: 8,303 bps, Translation length: 529 residues

Version

ENSDART00000173845.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]